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| Order | Family | English Common Name | Spanish Common Name | Portuguese Common Name | Scientific Name | Belonging | Records | Chance of observation | |
| 1 | Crocodilia | Crocodylidae | Nile Crocodile | Cocodrilo del Nilo | Crocodylus niloticus | Native | 5 | V | |
| 2 | Squamata | Gekkonidae | Okavango Dwarf Gecko | Lygodactylus chobiensis | Native | 1 | III | ||
| 3 | Varanidae | Nile Monitor | Varanus niloticus | Not listed | 2 | III | |||
| 4 | Ornate Monitor | Varano Ornatus | Varanus ornatus | Not listed | 1 | III |
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